Immunology of the exposome: addressing the crisis in chronic inflammatory disease
Discussion meeting organised by Professor Judith Allen FMedSci FRS and Dame Fiona Powrie DBE FMedSci FRS
Exposure to environmental challenges such as pollutants and infections (collectively the exposome) interact with our genes to cause and exacerbate chronic inflammatory diseases. However, we do not understand how the immune system at barrier surfaces decodes environmental drivers of disease. By bringing together immunologists with environmental scientists we aim to drive new solutions to the global crisis of chronic disease.
Programme
The programme, including speaker biographies and abstracts, will be available soon. Please note that the programme may be subject to change.
Poster session
There will be a poster session on Monday 12 October 2026. If you would like to present a poster, please submit your proposed title, abstract (up to 200 words), author list, and the name of the proposed presenter and institution no later than Friday 11 September 2026. Acceptances may be made on a rolling basis so we recommend submitting as soon as possible in case the session becomes full. Submissions made within one month of the meeting may not be included in the programme booklet.
Attending the event
This event is intended for researchers in relevant fields.
- Free to attend
- Both virtual and in-person attendance is available. Advance registration is essential
- Lunch is available on both days of the meeting for an optional £25 per day. There are plenty of places to eat nearby if you would prefer to purchase food offsite. Participants are welcome to bring their own lunch to the meeting
Please note that scientific meetings hosted by the Royal Society do not necessarily represent a Royal Society position or signify an endorsement of the speakers or content presented.
Enquiries: Contact the Scientific Programmes team.
Organisers
Schedule
Chair
Professor Judith Allen FMedSci FRS
University of Manchester, UK
Professor Judith Allen FMedSci FRS
University of Manchester, UK
Judi Allen has a PhD from the University of California, Berkeley. Following a postdoc at Imperial College, London, she established her own group at the University of Edinburgh. In 2016 Judi moved to the University of Manchester, where she is currently a Professor of Immunobiology in the Lydia Becker Institute of Immunology & Inflammation and the Manchester Cell Matrix Centre, and Director of the MRC CoRE in Exposome Immunology. The Allen laboratory investigates the host immune response to parasite infection with a focus on type 2 immunity, the response mammals characteristically make to large multicellular parasites (helminths). Her studies of macrophage function in type 2 settings led to an increased understanding of the evolutionary relationship between type 2 immunity, parasite control and tissue repair. Her lab is currently investigating how the type 2 cytokines, IL-4 and IL-13, regulate the extra-cellular matrix.
| 09:00-09:05 |
Welcome by the Royal Society and organiser
Professor Judith Allen FMedSci FRSUniversity of Manchester, UK
Professor Judith Allen FMedSci FRSUniversity of Manchester, UK Judi Allen has a PhD from the University of California, Berkeley. Following a postdoc at Imperial College, London, she established her own group at the University of Edinburgh. In 2016 Judi moved to the University of Manchester, where she is currently a Professor of Immunobiology in the Lydia Becker Institute of Immunology & Inflammation and the Manchester Cell Matrix Centre, and Director of the MRC CoRE in Exposome Immunology. The Allen laboratory investigates the host immune response to parasite infection with a focus on type 2 immunity, the response mammals characteristically make to large multicellular parasites (helminths). Her studies of macrophage function in type 2 settings led to an increased understanding of the evolutionary relationship between type 2 immunity, parasite control and tissue repair. Her lab is currently investigating how the type 2 cytokines, IL-4 and IL-13, regulate the extra-cellular matrix. |
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| 09:05-09:35 |
Talk title TBC
Professor Martine VrijheidBarcelona Institute for Global Health, Spain
Professor Martine VrijheidBarcelona Institute for Global Health, Spain Professor Martine Vrijheid is Research Professor and Director of the Environment and Health over the Lifecourse Programme at the Barcelona Institute for Global Health (ISGlobal). As environmental epidemiologist, her research is driven by the need to protect vulnerable population groups, in particular children, from the harmful effects of environmental (chemical, physical and social) exposures. She has a demonstrated record of international leadership in child health, environmental pollutants, and spearheaded the study of exposome and multi-omics determinants of child health. She led European HELIX (Human Early Life Exposome) and ATHLETE (Advancing Tools for Human Early Life Exposome Research and Translation) projects, building deep exposome databases across European cohorts. She coordinates IHEN (International Human Exposome Network), establishing a global exposome network, preparing exposome resources, and developing a roadmap for future exposome research. She is active in a range of international expert panels, advisory boards, and teaching and translational activities. |
| 09:35-10:00 |
Human immune systems are shaped by environmental exposures early in life
Dr Petter BrodinImperial College London, UK
Dr Petter BrodinImperial College London, UK Petter Brodin is Garfield Weston Chair and Professor of pediatric immunology at MRC Laboratory of Medical Sciences, LMS at Imperial College London and professor of Pediatric immunology at Karolinska Institutet in Stockholm, Sweden. The Brodin lab (https://brodinlab.com/) develops and applies novel experimental and computational methods to describe human immune system variation with a particular interest in the immune systems of children, its development early in life, and its role in health and disease during childhood. |
| 10:00-10:30 |
Talk title TBC
Dr Darragh DuffyPasteur Institute, France
Dr Darragh DuffyPasteur Institute, France Darragh Duffy is a Director of Research at the Institut Pasteur in Paris where he leads the Translational Immunology unit. He is also co-coordinator of the LabEx Milieu Interieur consortium and holds a position at the Centre for Immunology & Infection (C2i), Hong Kong where he leads the Healthy Human Global Project. The overall goal of his research is to better understand the fundamental mechanisms behind inter-individual differences in immune responses and apply these discoveries to relevant clinical questions. His team applies systems immunology approaches to population cohorts to quantify age, sex, genetic and environmental determinants of immune responses. In parallel they apply the same approaches to experimental clinical studies in infection and autoimmunity. They work closely with clinical collaborators with the goal that the research findings will help to develop new patient management strategies. |
| 10:30-11:00 |
Talk title TBC
Professor Magnus RattrayUniversity of Manchester, UK
Professor Magnus RattrayUniversity of Manchester, UK |
| 11:00-11:15 |
Coffee break
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| 11:15-11:45 |
UK Biobank: scale, depth, duration… but, most importantly, accessibility
With its unique combination of scale, depth, duration and accessibility, UK Biobank is enabling tens of thousands of researchers worldwide to perform innovative discovery science. This talk will provide information about UK Biobank and highlight recent enhancements. UK Biobank is a prospective cohort study of 500,000 people aged 40-69 years when recruited from across the United Kingdom in 2006-10. It integrates large-scale genomic data (including sequencing) and deep phenotyping data (including lifestyle factors, physical measures and multi-modal imaging) with long-term longitudinal health records. The recent addition of large-scale proteomic and metabolomic data has created an even more powerful resource for enabling better understanding of disease biology and discovery of novel drug targets. In order to accommodate the increasing scale and complexity of the database, UK Biobank has established a cloud-based Research Analysis Platform. It provides secure access to large-scale computing and novel technologies without the problems of transferring, collating, storing, and accessing these large-scale data. The provision of financial credits for early-career researchers and those in less well-resourced settings democratises access to this unique research resource, further enabling advances in discovery science and improvements in human health.
Sir Rory Edwards Collins FMedSci FRSUK Biobank
Sir Rory Edwards Collins FMedSci FRSUK Biobank Rory Collins is an epidemiologist who studies prevention and treatment of chronic diseases. He is the founding Head of Oxford University’s Nuffield Department of Population Health. During the past 40 years, he has conducted large randomised trials which have demonstrated that clot-dissolving and clot-preventing treatments during a heart attack more than halve mortality, and that lowering LDL-cholesterol with statins safely reduces cardiovascular death and disability. He has led UK Biobank since 2005. Involving 500,000 participants, it is the largest deeply-characterized prospective study globally, available for health research. About 20,000 researchers worldwide actively use it, generating ~5000 papers in 2024 alone. |
| 11:45-12:15 |
Discussion: Tools to interrogate cohort data
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Chair
Dr Sheena Cruickshank
University of Manchester, UK
Dr Sheena Cruickshank
University of Manchester, UK
Professor Sheena Cruickshank is an immunologist investigating the impact of different exposome factors on barrier immunology and susceptibility to disease and infection. Her research is heavily informed by patient and public involvement and she is an award-winning science communicator.
| 13:30-13:50 |
Talk title TBC
Dr Gyaviira NkurunungiMRC/UVRI and LSHTM Uganda Research Unit, Uganda and LSHTM, UK
Dr Gyaviira NkurunungiMRC/UVRI and LSHTM Uganda Research Unit, Uganda and LSHTM, UK Gyaviira Nkurunungi is an Associate Professor at the MRC/UVRI and LSHTM Uganda Research Unit, and the London School of Hygiene & Tropical Medicine (LSHTM). He leads the Immunomodulation and Vaccines (I-Vac) group in Uganda, integrating expertise in immunology, data science, statistics and epidemiology. The I-Vac group focuses on the immunomodulatory effects of environmental exposures on both communicable and non-communicable diseases, and on vaccine immunogenicity and effectiveness, combining cutting-edge wet-lab techniques with computational approaches to identify biological predictors of vaccine response. He previously led the immunology team on an MRC/UKRI-funded programme of Ugandan vaccine trials exploring population differences in vaccine-specific responses and, with Wellcome and EDCTP early-career funding, designed exploratory studies leveraging the resulting sample archive. Gyaviira’s PhD at LSHTM investigated immunological mechanisms underlying helminth–allergy associations in rural and urban Uganda. He is a member of the EMBO Global Investigator Network and the HypoVax Global Knowledge Hub on Tackling Vaccine Hyporesponsiveness (https://hypovax.org). |
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| 13:50-14:10 |
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| 14:10-14:30 |
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| 14:30-15:00 |
Discussion
Dr Sheena CruickshankUniversity of Manchester, UK
Dr Sheena CruickshankUniversity of Manchester, UK Professor Sheena Cruickshank is an immunologist investigating the impact of different exposome factors on barrier immunology and susceptibility to disease and infection. Her research is heavily informed by patient and public involvement and she is an award-winning science communicator. |
| 15:00-15:30 |
Coffee break
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| 15:30-15:50 |
Measuring air pollution and human exposure
Measuring human exposure to air pollution creates a technical and data analysis challenge. The UK has a relatively extensive outdoor air pollution measurement network (~300 sites), but even this is hampered by the relatively small number of species measured and the differing representativeness of the measurement locations. Over the past five years, three urban ‘supersites’ have been created that augment the network with measurements of a wide range of other species, enabling a greater assessment of human exposure to poor air quality in the urban environment. Such measurements can be complemented with high resolution satellite measurements to provide a greater spatial coverage for targeted pollutants. However, as we spend 90% of our time indoors, we must consider air quality within the home and workplace that might be different from outdoors both in terms of concentrations and also chemical composition. This creates even more of a challenge as every building is different and it is often inconvenient to deploy the necessary instrumentation in people's homes. Advancements in lower-cost/miniaturised sensor technologies have enabled the development of highly portable instrumentation suitable for the assessment of personal exposure to multiple pollutants. This enables us to draw more reliable associations between exposure and health effects in panels of hundreds of people.
Professor James LeeYork University, UK
Professor James LeeYork University, UK James Lee is research professor of atmospheric chemistry at the University of York and the National Centre for Atmospheric Science, based in the Wolfson Atmospheric Chemistry Laboratories. Professor Lee has led the development of techniques to make direct measurements of NOx flux from an elevated site above central London (the BT tower), in Beijing and in Delhi and from aircraft flights over central London. These flux measurements have been compared to the emissions estimates, with the estimates typically under predicting the amount of pollutant emitted. This work has helped improve these estimated emissions, which in turn should lead to improved predictions of current and future air quality and help to direct air pollution abatement. Professor Lee has also carried out research into ozone formation pathways in different cities (eg London, Manchester, Beijing, Delhi), in order to assess the key processes that lead to the formation of this secondary pollutant. This knowledge has then been used to assess the effect of future emission reductions on ozone formation, which do not follow each other linearly. |
| 15:50-16:10 |
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| 16:10-16:30 |
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| 16:30-17:00 |
Discussion and closing remarks
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Chair
Professor Dame Fiona Powrie DBE FMedSci FRS
University of Oxford, UK
Professor Dame Fiona Powrie DBE FMedSci FRS
University of Oxford, UK
Fiona Powrie is the Director of the Kennedy Institute of Rheumatology and Principal Investigator in the Translational Gastroenterology Unit, University of Oxford. Her research interests include characterisation of the interaction between the intestinal microbiota and the host immune system and how this mutualistic relationship breaks down in inflammatory bowel disease.
Fiona's work has identified the functional role of regulatory T cells in intestinal homeostasis and shed light on their development and mechanism of action. She has also shown that both adaptive and innate immune mechanisms contribute to intestinal inflammation and identified the IL-23 pathway as a pivotal player in the pathogenesis of chronic intestinal inflammation.
Her current work seeks to translate findings from model systems into the clinic in inflammatory bowel disease patients. Fiona received the Ita Askonas Award from the European Federation of Immunological Societies for her contribution to immunology in Europe and the Louis-Jeantet Prize for Medicine 2012.
She was elected a Fellow of the Royal Society in 2011, EMBO in 2013 and the Academy of Medical Sciences in 2014. Fiona joined the Wellcome Trust's Board of Governors in 2018.
| 09:00-09:30 |
Asthma as a disease of impaired barrier function
Asthma is an inflammatory disorder of the airways of reduced regulatory T cell-induced tolerance leading to induction of T(H)2- and innate ILC2-type lymphocytes, IgE-driven mast cell activation and eosinophil recruitment and driven by a cytokine gene cluster on 5q31-q33 encoding interleukin-4 (IL-4), -5, -9, -13 and GM-CSF. Interrupting this cascade forms the basis of modern asthma treatment with allergen immunotherapy, topical corticosteroids and IgE/cytokine blocking biologics. Upstream of the T2 inflammatory cascade is the epithelium which orchestrates the inflammatory response by interacting with environmental allergens, microbes and pollutants to produce a chronic wound scenario involving tissue injury and aberrant repair. Epithelial cells become active responders to these environmental threats through structural damage, barrier failure and abnormal repair leading to chronic inflammation and remodelling manifesting as goblet cell hyperplasia, matrix deposition and an increase in smooth muscle. Four interacting processes are involved: 1) Breakdown in barrier function results from disruption of epithelial cell tight junctions allowing inhaled substances to pass more easily into the airway wall and interact with immune and inflammatory cells, 2) Release of alarmins (eg, TSLP, IL-33, IL-25, adenosine) from injured airway epithelial cells to trigger T2 and ILC2 effector responses, 3) Generation of growth factors to promote remodelling and persistent inflammatory phenotypes and 4) Reduced mucosal anti-oxidant defence and innate immunity to enhance susceptibility to air pollutants and respiratory viruses. The "epithelial era" of research emphases the epithelium as a primary target for treatment (eg, anti-TSLP) to prevent initiation of the inflammatory cascade at its source.
Professor Sir Stephen Holgate CBE KBE FMedSciUniversity of Southampton, UK
Professor Sir Stephen Holgate CBE KBE FMedSciUniversity of Southampton, UK Stephen has researched into the mechanisms and treatment of asthma with >1000 research publications. His work has focused on components of the breathed environment and how these interact with a susceptible epithelium and airway mucosa to cause the inflammatory responses characteristic of asthma. He is a Founder Fellow of the Academy of Medical Sciences, past president of the British Society for Allergy and Clinical Immunology, British Thoracic Society, British Association for Lung Research and the Collegium International Allergologicum. His work has been recognised by international awards such as the King Faisal and J Allyn Taylor International Prizes in Medicine. He currently PI of the MRC Net Zero Health Research Hub Coordination Node, Special Advisor to the RCP on Air Quality and led the 2025 report, “A Breath of Fresh Air”. He was appointed CBE in 2011 for contributions to Clinical Science and Knighted in 2020 for Medical Research. |
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| 09:30-10:00 |
Talk title TBC
Professor Anna HansellUniversity of Leicester, UK
Professor Anna HansellUniversity of Leicester, UK Anna Hansell is an environmental epidemiologist, with special expertise in health impacts of air pollution on respiratory disease and in environmental noise and health. Her initial career was in respiratory medicine, after which she specialised in public health; she has been working in environmental epidemiology for over 20 years. She has conducted some of the longest running and largest UK studies looking at health effects of air pollution including bioaerosols and is one of a small number of UK epidemiologists investigating long-term health effects of transport noise. She is a Professor of Environmental Epidemiology and founding Director of the Centre for Environmental Health and Sustainability at the University of Leicester. She is director of the National Institute of Health Research Health Protection Research Unit in Chemical Threats and Hazards at the University of Leicester, working with UK Health Security Agency and the Health and Safety Executive, and also the Environment Theme Lead in the Leicester NIHR Biomedical Research Centre. Anna holds an honorary consultant post with UK Health Security Agency and with the University Hospitals of Leicester NHS Trust, and chairs the UK government scientific advisory committee, the Committee on the Medical Effects of Air Pollutants. |
| 10:00-10:30 |
Talk title TBC
Dr James LeeThe Francis Crick Institute, UK
Dr James LeeThe Francis Crick Institute, UK Professor James Lee is a Clinician Scientist Group Leader at the Francis Crick Institute and a Consultant Gastroenterologist at the Royal Free Hospital. He trained in medicine at the University of Oxford and gained his PhD from the University of Cambridge in 2011 as part of the inaugural Wellcome Trust Clinical PhD Programme. In 2015, he was awarded a Wellcome Trust Intermediate Clinical Fellowship and spent two years of this award at Harvard University before returning to the University of Cambridge in 2018 to establish a research group at the newly-opened Cambridge Institute for Therapeutic Immunology and Infectious Disease. He moved to the Crick in 2021 where he leads the Genetic Mechanisms of Disease laboratory – seeking to translate genetic associations into a better understanding of autoimmune and inflammatory disease biology. |
| 10:30-11:00 |
Coffee break
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| 11:00-11:30 |
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| 11:30-12:00 |
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| 12:00-12:30 |
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| 13:30-14:00 |
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Dr Suzanne CloonanTrinity College Dublin, Ireland
Dr Suzanne CloonanTrinity College Dublin, Ireland Dr Suzanne Cloonan is Professor of Respiratory Biochemistry at Trinity College Dublin and Adjunct Assistant Professor of Biochemistry in Medicine at Weill Cornell Medicine, New York. Her research examines how environmental exposures, particularly cigarette smoke, disrupt immune and epithelial function in the lung. After completing her PhD at Trinity College Dublin and postdoctoral training at Harvard Medical School, she established an internationally recognised programme at Weill Cornell Medicine investigating how metabolic and mitochondrial stress reshape host–pathogen responses, inflammation and tissue repair in chronic lung disease. She relocated to Trinity in 2020 and her group uses biochemical, immunometabolic and regenerative models to understand how smoke‑driven injury rewires immunity and promotes long‑term susceptibility to infection and chronic respiratory pathology. She holds leadership roles within the European Respiratory Society and American Thoracic Society and leads a multidisciplinary research programme supported by major national and international funding. |
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| 14:00-14:30 |
Talk title TBC
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| 14:30-15:00 |
Outside the brain: how glial cells orchestrate tissue immunity
Inflammatory diseases of the gut, lung and skin are major contributors to global morbidity and mortality. While epithelial, immune and stromal cell interactions have been extensively studied, treatment options remain limited. Identifying previously unrecognised cellular regulators of tissue immunity is therefore an urgent clinical priority. Our recent work has uncovered unexpected immunoregulatory roles for enteric glial cells. Using transcriptomic profiling and gene knockout models, we identified an IFNγ-enteric glia signalling axis that is essential for maintaining intestinal immune homeostasis and tissue integrity at steady state. Activation of this pathway is also required for effective tissue repair following pathogen invasion. Developmental lineage analysis further revealed tissue context-dependent immune gene modules in enteric glia, highlighting their broader immunological potential. Using spatial transcriptomics, we demonstrate that enteric glia form transcriptionally distinct, spatially organised communities that shape intestinal architecture in health and disease. We show that the intestine is compartmentalised, with the muscularis externa, which houses enteric ganglia, representing a region relatively shielded from immune infiltration. In Crohn’s disease, however, inflammatory glial populations emerge within the muscularis adjacent to immune cell infiltrates. Mechanistically, gene knockout model reveals that enteric glia drive intestinal plexitis by upregulating chemokines within this compartment. Together, these findings redefine enteric glia as central regulators of immune compartmentalisation and tissue defence in the intestine, providing a new conceptual framework for understanding neuro-immune interactions across barrier tissues and highlighting glial networks as potential therapeutic targets in chronic inflammatory disease.
Dr Fränze ProgatzkyOxford University, UK
Dr Fränze ProgatzkyOxford University, UK Dr Fränze Progatzky is a Principal Investigator at the Kennedy Institute of Rheumatology at the University of Oxford specialising in tissue biology. She obtained a PhD in immunology from Imperial College London and undertook her postdoctoral training in enteric neurobiology at the Francis Crick Institute. Fränze established her lab in October 2023. The work in her lab synergises and integrates her expertise and knowledge in mucosal immunology and neural biology to uncover how the peripheral nervous system, through glial cells, regulates immune responses and tissue repair in barrier organs such as the lungs, gut, and skin. She has received a prestigious Wellcome Career Development Award and a Lister Institute Research Prize. |
| 15:00-15:30 |
Coffee break
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| 15:30-16:00 |
Talk title TBC
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| 16:00-16:45 |
Discussion
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| 16:45-17:00 |
Overview and closing remarks
Professor Judith Allen FMedSci FRSUniversity of Manchester, UK
Professor Judith Allen FMedSci FRSUniversity of Manchester, UK Judi Allen has a PhD from the University of California, Berkeley. Following a postdoc at Imperial College, London, she established her own group at the University of Edinburgh. In 2016 Judi moved to the University of Manchester, where she is currently a Professor of Immunobiology in the Lydia Becker Institute of Immunology & Inflammation and the Manchester Cell Matrix Centre, and Director of the MRC CoRE in Exposome Immunology. The Allen laboratory investigates the host immune response to parasite infection with a focus on type 2 immunity, the response mammals characteristically make to large multicellular parasites (helminths). Her studies of macrophage function in type 2 settings led to an increased understanding of the evolutionary relationship between type 2 immunity, parasite control and tissue repair. Her lab is currently investigating how the type 2 cytokines, IL-4 and IL-13, regulate the extra-cellular matrix.
Professor Dame Fiona Powrie DBE FMedSci FRSUniversity of Oxford, UK
Professor Dame Fiona Powrie DBE FMedSci FRSUniversity of Oxford, UK Fiona Powrie is the Director of the Kennedy Institute of Rheumatology and Principal Investigator in the Translational Gastroenterology Unit, University of Oxford. Her research interests include characterisation of the interaction between the intestinal microbiota and the host immune system and how this mutualistic relationship breaks down in inflammatory bowel disease. Fiona's work has identified the functional role of regulatory T cells in intestinal homeostasis and shed light on their development and mechanism of action. She has also shown that both adaptive and innate immune mechanisms contribute to intestinal inflammation and identified the IL-23 pathway as a pivotal player in the pathogenesis of chronic intestinal inflammation. Her current work seeks to translate findings from model systems into the clinic in inflammatory bowel disease patients. Fiona received the Ita Askonas Award from the European Federation of Immunological Societies for her contribution to immunology in Europe and the Louis-Jeantet Prize for Medicine 2012. She was elected a Fellow of the Royal Society in 2011, EMBO in 2013 and the Academy of Medical Sciences in 2014. Fiona joined the Wellcome Trust's Board of Governors in 2018. |