Chemical probes for lysosomal biology
Theo Murphy meeting organised by Dr Simon Wheeler and Professor Elizabeth New.
Lysosomal function underpins both cellular health and disease. Despite this our understanding of how these organelles work, and how they contribute to important pathologies, is far from complete. The use of chemical sensors to elucidate these mechanisms provides an exciting but largely unexploited opportunity to facilitate fundamental research and ultimately to develop therapies.
The schedule of talks and speaker biographies are available below. Speaker abstracts will be available closer to the meeting date.
Attending this event
This event is intended for researchers in relevant fields, and is a residential meeting taking place at Hilton York, 1 Tower Street, York, YO1 9WD.
- Free to attend
- Advance registration essential (more information about registration will be available soon)
- This is an in person meeting
- Catering options are available to purchase during registration. Participants are responsible for their own accommodation booking.
Enquiries: contact the Scientific Programmes team
Organisers
Schedule
Chair
Professor Frances Platt FMedSci FRS, University of Oxford, UK
Professor Frances Platt FMedSci FRS, University of Oxford, UK
Professor Frances Platt obtained her BSc from Imperial College London (Zoology) and her PhD from the University of Bath, UK. She was a post-doctoral fellow at Washington University Medical School in St. Louis, USA. She was a Lister Institute Senior Research Fellow and is currently Professor of Biochemistry and Pharmacology at the University of Oxford. Her main research interests include the biology and pathobiology of glycosphingolipids and lysosomal disorders. Her research led to the development of miglustat for the treatment of glycosphingolipid lysosomal storage diseases. Professor Platt was awarded the Alan Gordon Memorial Award and the Horst Bickel Award for advances in metabolic disease therapy. She was elected a fellow of the Academy of Medical Sciences in 2011 and was the recipient of a Royal Society Wolfson Merit Award in 2013. In 2016 she became a Wellcome Trust Investigator in Science. She was appointed Head of the Department of Pharmacology in 2020 and was elected a Fellow of the Royal Society in 2021.
09:00-09:05 |
Welcome and introduction
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09:05-09:45 |
Controlling ion flux across the lysosome through two-pore channels
Professor Sandip Patel, UCL, UK
Professor Sandip Patel, UCL, UKSandip Patel is Professor of Cell Signalling at University College London. He obtained a BSc in Medical Biochemistry from Birmingham and a PhD in Pharmacology from Cambridge. Sandip held Research Fellowships funded by the Wellcome Trust and Hayward Foundation at several institutions in the USA and UK including Oxford prior to tenure. He was elected to the membership of Academia Europaea in 2020 and awarded the GL Brown Prize Lecture from the Physiological Society in 2023. Sandip sits on panels of various funding bodies including the Medical Research Council and he is currently the Deputy Head of the Department of Cell and Developmental Biology at UCL. His research has demonstrated the widespread physiological importance of so-called ‘acidic calcium stores’ within our cells and helped define the molecular mechanisms underpinning their actions. |
09:45-10:30 |
How are lysosomes integrated into the life of the cell
Dr Aakriti Jain, University of California, Berkeley, USA
Dr Aakriti Jain, University of California, Berkeley, USAAakriti obtained her BS in Chemical and Biomolecular Engineering from the University of California, Berkeley, and her MS in Biological Sciences from Université Diderot, Paris and the Center for Research and Interdisciplinary studies. During her PhD at the Francis Crick Institute in London, funded by the Marie-Sklowdoska-Curie doctoral fellowship, she studied dysregulation of mitochondrial metabolism in liver cancer. Following her doctoral work, she has been a postdoctoral researcher in Roberto Zoncu’s lab at UC Berkeley. In the Zoncu lab, she is not only continuing her study of metabolic perturbations in disease, but also overall organelle homeostasis pathways. By combining biochemical, cell biological and large-scale omics techniques, she is dissecting various aspects of lysosomal biology in both cancer and neurodegenerative disorders. |
10:30-11:00 |
Break
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11:00-11:45 |
Lysosomes as targets for cancer therapy
Dr Marja Jäättelä, Danish Cancer Institute, Denmark
Dr Marja Jäättelä, Danish Cancer Institute, DenmarkMarja Jäättelä received MD and DMSc degrees from the University of Helsinki in 1989 and 1990, respectively. Following postdoctoral training in Copenhagen, New York and Ann Arbor, she was appointed the head of the Apoptosis Laboratory at the Danish Cancer Institute in 1997 and promoted to the Head of Cell Death and Metabolism Unit in 2012. Additionally, she holds a professorship in Cell Death and Metabolism at the University of Copenhagen and is the director of the Center for Autophagy, Recycling and Disease. Her research focuses on cellular metabolism and lysosomal biology in cancer, and her work is best characterized as a successful combination of uncompromised and innovative basic science with strong translational interest. She is an internationally respected scientist as evidenced by over 50,000 citations, frequent lectures in major international meetings, ample funding and memberships in numerous learned societies, advisory boards, editorial boards and evaluation panels. |
11:45-12:30 |
GBA1 and parkinsonism: New tools for new times
Dr Ellen Sidransky, National Institutes of Health, USA
Dr Ellen Sidransky, National Institutes of Health, USADr Ellen Sidransky, Branch Chief of the Medical Genetics Branch, is a paediatrician and geneticist in the National Human Genome Research Institute at National Institutes of Health (NIH). She received her MD from Tulane University, trained in paediatrics at Northwestern University, and in Clinical Genetics at the NIH. Dr Sidransky played a lead role in establishing the association between glucocerebrosidase and parkinsonism. The author of over 250 publications, she continues to focus on the complexity encountered in 'simple' Mendelian disorders, the role of lysosomal pathways in parkinsonism, and the development of small molecule chaperone therapy for Gaucher disease and for parkinsonism. She is the recipient of the 2019 Van Andel Award for Outstanding Achievements in Parkinson’s Disease Research, the 2019 U.S. Public Health Service Meritorious Service Medal, the 2021 WORLDSymposium Roscoe O. Brady Award for Innovation and Accomplishment, and the 2024 Breakthrough Prize in Life Sciences. |
Chair
Dr Simon Wheeler, De Montfort University, UK
Dr Simon Wheeler, De Montfort University, UK
Simon Wheeler studied chemistry at the University of Bristol before working in the pharma industry for 14 years as a synthetic chemist. Redundancy prompted him to retrain as a pharmacist at De Montfort University but he quickly found that this profession offered insufficient opportunity for his curiosity. He returned to De Montfort to study for a PhD in cell biology (under the supervision of Dr Dan Sillence) where he examined the cellular mechanisms of lysosomal storage disorders especially Niemann-Pick type C. After a period of post-doctoral work on fluorescent europium-based probes with Dr Steve Butler at Loughborough University he returned to De Montfort University in August 2022 as a lecturer in pharmaceutical chemistry. His research interests are in fragment based drug discovery and crown ether-based fluorescent probes for Ca2+.
13:30-14:15 |
STARD3 transfers sphingosine at lysosome-ER contact sites
Dr Denisa Jamecna, Heidelberg University, Germany
Dr Denisa Jamecna, Heidelberg University, GermanyDr Jamecna studied Biology at the Masaryk University in Brno and at the University College London. They received their PhD from the Université Côte d’Azur in Nice in 2018. During their PhD in the group of Dr Bruno Antonny, they studied how intrinsically disordered N-terminal regions in OSBP and related proteins affect membrane tethering geometry and dynamics of membrane contact sites. Currently, Dr Jamecna works as a Walter Benjamin postdoctoral fellow in the lab of Dr Doris Höglinger at the Biochemistry Center Heidelberg. Their research focuses on the mechanism of sphingosine transport at the lysosome - ER contact sites. Their work combines cell biology, biochemistry, chemical biology and structural biology. They specialize in using synthetic photoactivatable and clickable (pac) lipid probes and their organelle-targeted derivatives to investigate subcellular lipid distribution, metabolism and protein-lipid interactions. |
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14:15-15:00 |
Visualization of Fe(II) release inside endosomes and lysosomes by chemical probes
Dr Takusu Hirayama, Gifu Pharmaceutical University, Japan
Dr Takusu Hirayama, Gifu Pharmaceutical University, JapanDr Tasuku Hirayama received his BS degree from Kyoto University in 2004. He also obtained his MS (2006) and PhD (2009) in chemical biology from Kyoto University under the direction of Professor Yukio Yamamoto. He joined Professor Christopher Chang’s group at University of California, Berkeley as a postdoctoral fellow. In 2010, he joined Professor Hideko Nagasawa’s group in Gifu Pharmaceutical University as an assistant professor. He has been an associate professor in Gifu Pharmaceutical University since 2016. His research interests include development of unique chemical tools to understand biological functions of metal ions. |
15:00-15:30 |
Break
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15:30-16:15 |
Organelle-targeted multimodal probes for cellular imaging
Dr Liam Adair, The University of Sydney, Australia
Dr Liam Adair, The University of Sydney, AustraliaLiam Adair completed an MSci Chemistry with Medicinal Chemistry at the University of Glasgow, with a year in industry at AstraZeneca. He remained at Glasgow for PhD studies in total synthesis with Professor Rudi Marquez and Dr Joëlle Prunet. Since 2018 he has been a postdoctoral researcher at the University of Sydney, where he is currently a research fellow in the ARC Centre of Excellence for Innovations in Peptide and Protein Science. His research involves the design, synthesis, and application of targeted and responsive fluorophores and multimodal probes for bioimaging. |
16:15-17:00 |
Speaker tbc
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Chair
Dr Elizabeth New, University of Sydney, Australia
Dr Elizabeth New, University of Sydney, Australia
Dr Elizabeth New undertook her undergraduate and Masters studies at the University of Sydney. She completed her PhD studies in 2010 at the University of Durham with Professor David Parker. Liz was then a Royal Commission for the Exhibition of 1851 Research Fellow at the University of California, Berkeley, working with Professor Chris Chang. In 2012, she returned to the University of Sydney, holding a Discovery Early Career Research Fellowship from the Australian Research Council from 2012-2014, and a Westpac Research Fellowship from 2016. Liz’s research interests lie in the development of small molecule sensors for the study of oxidative stress and metal ions in biology.
09:00-09:45 |
FIRE-pHLy: A genetically encoded, ratiometric sensor for chemogenetic interrogation of lysosomal pH
Professor Aimee Kao, University of California San Francisco, USA
Professor Aimee Kao, University of California San Francisco, USADr Aimee Kao, MD, PhD, is the John Douglas French Foundation Endowed Professor of Neurology at the University of California, San Francisco. She studied Neuroscience at Brown University and received MD/PhD degrees from the University of Iowa. She completed Neurology residency at UCSF, followed by fellowships in Behavioral Neurology and molecular genetics of ageing. She is an expert in managing Alzheimer's disease and age-related cognitive disorders. Dr Kao’s laboratory investigates the basic mechanisms underlying neurodegenerative disorders, with a focus on how ageing, stress and gene mutations disrupt lysosomal function and protein homeostasis. She currently directs the UCSF Medical Scientist Training Program and is principle investigator of an NIH-sponsored Tau Center without Walls. Dr Kao has been awarded the Paul G. Allen Family Foundation Distinguished Investigator Award in Neurodegenerative Diseases, the Glenn Award for Research in the Biological Mechanisms of Aging and the American Neurological Society’s Derek Denny Brown Award. |
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09:45-10:30 |
Interrogation of lysosome biology by pH sensitive nanoparticles
Professor Jinming Gao, UT Southwestern Medical Center, USA
Professor Jinming Gao, UT Southwestern Medical Center, USAProfessor Jinming Gao holds an Elaine Dewey Sammons Distinguished Chair in Cancer Research at UT Southwestern Medical Center in Dallas, Texas. He received a PhD in physical organic chemistry from Harvard University, and he completed postdoctoral training in biomedical engineering at the Massachusetts Institute of Technology. Dr Gao’s lab studies the science of nanotechnology and cancer. Researchers in the Gao Lab designed proton transistor nanoparticles that digitize tumour acidotic signals from dysregulated cancer cell metabolism. Pegsitacianine, one such nanosensor, recently received Breakthrough Therapy Designation in cytoreductive surgery of peritoneal metastasis. Phase 2 clinical trials show Pegsitacianine identified unresected residual diseases in over 50% of patients after routine cancer surgery. Dr Gao’s lab also discovered synthetic polymers (PC7A, PSC7A) for non-canonical activation of stimulator of interferon genes (STING) pathway with improved tumour and cell selectivity and antitumor immunity over small molecule agonists. A nanoparticle STING agonist has entered first-in-human trial in November, 2023. |
10:30-11:00 |
Break
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11:00-11:45 |
Progress and challenges for protein-based probes of metal ions
Professor Robert E Campbell, The University of Tokyo, Japan
Professor Robert E Campbell, The University of Tokyo, JapanDr Robert E Campbell is a Professor in the Department of Chemistry, School of Science, at The University of Tokyo (2018 - present). He earned his PhD in Chemistry at the University of British Columbia (1994-2000) and undertook postdoctoral research at the University of California, San Diego (2000-2003). From 2003 to 2023 he was a Professor at the University of Alberta. He is a leading developer of optogenetic tools, including a complete spectral palette of fluorescent protein-based calcium ion indicators. He has distributed >8000 samples of fluorescent protein-based tools to labs around the world. Recognitions include a Stanford Neurosciences Institute Visiting Scholar Award (2017), the Teva Canada Limited Biological and Medicinal Chemistry Award (2016), the Rutherford Memorial Medal from the Royal Society of Canada (2015), and the Boehringer Ingelheim Research Excellence Award (2014), and a Canada Research Chair (2004-2014). |
11:45-12:30 |
Nanobodies as tools for structure-based discovery research in lysosomal biology
Professor Simon Newstead, University of Oxford, UK
Professor Simon Newstead, University of Oxford, UKSimon Newstead holds the David Phillips Chair of Molecular Biophysics in the Department of Biochemistry, is a member of the Kavli Institute for Nanoscience Discovery in Oxford and is a Professorial Fellow at Corpus Christi College, Oxford. Simon received his MBiochem (Hons) degree from the University of Bath in 2001 and his PhD in protein crystallography at St Andrews in 2004. Simon then joined the membrane protein laboratory of Professor So Iwata at Imperial College London, where he worked on structural studies of secondary active transporters and methods development in membrane protein structural biology. In 2009, he was awarded an MRC career development award to establish a research group in Oxford focused on cellular nutrient uptake and drug transport. In 2013, he became an Associate Professor in the Department of Biochemistry and senior subject tutor (Ordinary Student) in Biochemistry at Christ Church, Oxford. In 2015, he was promoted to Professor and in 2019 elected to the Royal Society of Biology. In 2022, Simon was appointed to the David Phillips Chair in Molecular Biophysics and Professorial Fellow at Corpus Christi College. Simon currently leads the Structural Biology and Molecular Biophysics research theme in the Department of Biochemistry. |
Chair
Dr Melike Lakadamyali, University of Pennsylvania, USA
Dr Melike Lakadamyali, University of Pennsylvania, USA
Dr Lakadamyali obtained her BS in Physics in 2001 from the University of Texas, Austin and her PhD in Physics in 2006 from Harvard University. Dr Lakadamyali started her independent group at ICFO-Institute of Photonic Sciences in Barcelona in 2010 and was awarded tenure in 2015. In 2017 she moved to the University of Pennsylvania´s Department of Physiology at the Perelman School of Medicine as an Assistant Professor and was promoted to Associate Professor in 2020. She received several honours including the European Molecular Biology Organization (EMBO) Young Investigator award, Technical University of Munich-Institute for Advanced Study Hans Fischer Fellowship and the Linda Pechenik Montague Investigator award. Her research focuses on the development of advanced light microscopy methods that provide high spatial and temporal resolution. Her lab is applying these advanced microscopy methods to study how the cytoskeleton and motor proteins regulate trafficking and spatial organization of organelles in the cytoplasm. In addition, her lab is studying how chromatin structure regulates gene activity and cell identity.
13:30-14:15 |
Super-resolution imaging of sub-cellular dynamics of endolysosomes
Dr Jiajie Diao, University of Cincinnati College of Medicine, USA
Dr Jiajie Diao, University of Cincinnati College of Medicine, USADr Jiajie Diao is Associate Professor at University of University of Cincinnati College of Medicine, and a co-director of the Center for Chemical Imaging in Biomedicine. Dr Diao received his PhD in physics from University of Illinois at Urbana-Champaign and conducted his postdoc research at Stanford University. His research is using advanced biophysical tools to study subcellular dynamics of organells. Dr Diao has published more than 130 papers in top-tier journals including Nature, PNAS, Nat Struct Mol Biol, Nat Commun, Nat Protoc, Cell Chem Biol, Cell Rep, eLife, JACS, Angew Chem, ACS Nano, Biomaterials. In 2017, he was awarded the Young Scientist Prize in Biological Physics by the International Union of Pure and Applied Physics. He is an editorial board member of BMC Biology and a guest editor of PNAS, and has been serving as a reviewer for more than 80 journals. |
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14:15-15:00 |
Morpho-functional characterization of lysosomes by correlative light and electron microscopy
Dr Nalan Liv, University Medical Center Utrecht, The Netherlands
Dr Nalan Liv, University Medical Center Utrecht, The NetherlandsNalan Liv is Assistant Professor of Cell Biology, at Center for Molecular Medicine, University Medical Center Utrecht (UMCU). She leads a cellular nanoimaging and endo-lysosomal biology research team, and coordinates the Cell Microscopy Core. Nalan’s current research is dedicated to high-resolution understanding of intracellular structure-function relations in cancer cell biology, and she is awarded with multiple grants to study the role of lysosomes in carcinogenesis. Her team develops innovative high-resolution microscopy approaches and utilizes a combination of molecular biology, live-cell fluorescence microscopy, and ultrastructural electron microscopy tools to resolve how the endo-lysosomal system is rewired in cancer. |
15:00-15:30 |
Break
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15:30-16:15 |
Development and application of a spectro-microscopy toolbox to study lysosomal biology
Dr Mark Hackett, Curtin University, Australia
Dr Mark Hackett, Curtin University, AustraliaDr Hackett is a mid-career researcher in the field of analytical chemistry and applied spectroscopy, currently completing an Australian Research Council Future Fellowship at Curtin University. He completed his PhD at The University of Sydney (2011, Chemistry), which was followed by two-postdoctoral fellowships at the University of Saskatchewan, Canada (2011 – 2016). His primary research interest is the development and optimization of novel elemental and bio-molecular microscopy techniques for application to the field of neuroscience to study the mechanisms of brain ageing and neurodegenerative disease. The main spectroscopic techniques involved in his research program include Fourier transform infrared spectroscopy (FTIR), Raman spectroscopy, X-ray fluorescence microscopy (XFM) and X-ray absorption spectroscopy (XAS). |
16:15-16:55 |
Talk title tbc
Dr Chayan Nandi, Indian Institute of Technology Mandi, India
Dr Chayan Nandi, Indian Institute of Technology Mandi, IndiaDr Chayan Kanti Nandi, is a Professor at the Indian Institute of Technology Mandi (IIT Mandi). He completed his PhD in 2006 in physical chemistry at the Indian Institute of Technology Kanpur India. Professor Nandi was a post doctoral fellow in Geothe University Germany (2006-2009) and in Princeton University (2009-2010). He received the prestigious Alexander Von Humboldt (AvH) Fellowship during his stay in Germany. After completing his post doctoral fellowship, he joined IIT Mandi as an Assistant Professor in 2010. He has several awards in his name. He has been awarded the Chemical Research Society of India (CRSI) bronze medal in 2020 for his outstanding research in nanomaterials chemistry. His main research focus is to design new fluorescent nanomaterials such as carbon nanodots, metal nanoclusters, quantum dots, super paramagnetics iron oxide nanoparticles for their application in single molecule localization based super resolution microscopy. |
16:55-17:00 |
Closing remarks
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