Obligate intracellular bacteria: From bench to field and bedside

03 - 04 November 2025 09:00 - 17:00 Holiday Inn Manchester - City Centre Free
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Intracellular bacteria

Theo Murphy meeting organised by Dr Jing Jing Khoo, Dr Jeanne Salje and Dr Richard Hayward.

Obligate intracellular bacteria include a wide range of bacteria with medical and veterinary importance. Rickettsiales and Chlamydiales include numerous important human, livestock and wildlife pathogens. Other members include arthropod symbionts that could be implicated in the control of arthropod disease vectors. This meeting will be the first in the UK having researchers and clinicians from multi-disciplinary backgrounds (from infection biology to ecology) to share the latest insights and generate new research directions linking both pathogens and symbionts.

Programme

The programme, including speaker biographies and abstracts, will be available soon. Please note the programme may be subject to change.

Poster session

There will be a poster session from 4.30pm on Monday 3 November 2025. If you would like to present a poster, please submit your proposed title, abstract (up to 200 words), author list, and the name of the proposed presenter and institution to the Scientific Programmes team. Acceptances may be made on a rolling basis so we recommend submitting as soon as possible in case the session becomes full. Submissions made within one month of the meeting may not be included in the programme booklet.

Attending the event

This event is intended for researchers in relevant fields.

  • Free to attend and in-person only
  • When requesting an invitation, please briefly state your expertise and reasons for attending
  • Requests are reviewed by the meeting organisers on a rolling basis. You will receive a link to register if your request has been successful
  • Catering options will be available to purchase upon registering. Participants are responsible for booking their own accommodation. Please do not book accommodation until you have been invited to attend the meeting by the meeting organisers

Enquiries: Contact the Scientific Programmes team.

Organisers

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    Dr Jing Jing Khoo

  • Dr Jeanne Salje

    Dr Jeanne Salje

    Dr. Salje is an Assistant Professor and Wellcome Trust Senior Research Fellow at Cambridge University at the University of Cambridge, with joint appointments at the Department of Biochemistry, the Department of Pathology, and the Cambridge Institute for Medical Research. She is also a Fellow at St. John's College and an Honorary Visiting Research Fellow at the Mahidol Oxford Tropical Medicine Research Unit in Bangkok, Thailand. Her lab works on the cell biology of Orientia tsutsugamushi.

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    Dr Richard Hayward

Schedule

Chair

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Professor Richard Birtles

University of Salford, UK

09:00-09:05 Welcome by the Royal Society & Dr Jing Jing Khoo
09:10-09:30 Recent advances in our understanding of the biology and intracellular lifecycle of Orientia tsutsugamushi

Orientia tsutsugamushi is the etiological agent of scrub typhus, a neglected but life-threatening vector-borne disease that poses a growing threat to public health across the Asia-Pacific region and beyond. Unlike many intracellular bacteria, O. tsutsugamushi is an obligate cytoplasmic pathogen, replicating freely within the host cell cytosol rather than within a vacuolar compartment. This unusual lifestyle is supported by a highly non-canonical cell envelope whose structure and composition deviate markedly from classical Gram-negative paradigms. In this talk, I will highlight recent advances from our group that shed light on the unique biology of O. tsutsugamushi. Specifically, I will discuss our structural and functional analyses of the bacterial cell envelope, revealing adaptations that shape its interactions with host membranes and immune surveillance. I will also present new findings on the intracellular infection cycle, focusing on the molecular mechanisms governing bacterial trafficking along host microtubules, as well as the dynamic interplay between O. tsutsugamushi and key host cell factors. Together, these insights refine our understanding of how this highly adapted pathogen subverts eukaryotic cell biology to support survival and dissemination.

Dr Jeanne Salje

Dr Jeanne Salje

University of Cambridge, UK

09:30-09:50 Genome-wide CRISPR/Cas9 screen reveals an important role for sphingolipids in maintaining the integrity of the parasitophorous vacuole of Chlamydia trachomatis

The obligate intracellular bacterial pathogen Chlamydia trachomatis employs the secreted effector CpoS to modulate host cellular membrane trafficking and suppress a host defense response that aborts intracellular pathogen growth by inducing host cell death. To identify the molecular basis of this defense evasion, we applied a host-directed genome-wide CRISPR/Cas9 screening approach. Interestingly, this work revealed a CpoS-deficient mutant to exhibit a markedly increased dependence on host cellular synthesis of ceramides, the precursors of complex sphingolipids. Using novel microscopic reporters, we established that CpoS’ role in defense evasion involves preserving the integrity of Chlamydia’s parasitophorous vacuole (the inclusion) by ensuring an adequate sphingolipid supply. More specifically, we found that CpoS-deficient inclusions acquire reduced amounts of sphingolipids and become unstable, leading to the release of bacteria into the host cell cytosol, followed by inclusion rupture and host cell death. Exogenous addition of sphingosine stabilized CpoS-deficient inclusions, whereas disruption of host cellular ceramide synthesis destabilized wild-type inclusions. In combination, CpoS deficiency and impaired ceramide synthesis destabilized inclusions even earlier, resulting in infection clearance and host cell survival rather than host cell death. Overall, this study highlights how the vacuolar pathogen C. trachomatis maintains vacuole integrity by ensuring a steady sphingolipid supply, potentially offering inspiration and directions for future therapeutic strategies targeting parasitophorous vacuoles.

Dr Barbara Sixt

Dr Barbara Sixt

Umeå University, Sweden

09:50-10:10 Discussion
10:10-10:40 Break
10:40-11:00 Host immune response to different Orientia strains - Talk title TBC
Professor Lynn Soong

Professor Lynn Soong

University of Texas Medical Branch, US

11:00-11:20 Anaplasma - Talk title TBC
Dr Ian Cadby

Dr Ian Cadby

University of Bristol, UK

11:20-11:40 Chlamydia - Talk title TBC
Dr Richard Hayward

Dr Richard Hayward

University of Cambridge, UK

11:40-12:00 Discussion

Chair

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Dr Alistair Darby

University of Liverpool, UK

13:00-13:20 The Tick Cell Biobank: tick and insect cell lines for isolation, propagation and study of obligate intracellular arthropod-borne bacteria

Continuous cell lines derived from ticks and insects play an increasingly important role in many aspects of research on obligate intracellular bacterial pathogens and symbionts. The Tick Cell Biobank (TCB) was founded over 16 years ago at the University of Edinburgh, initially as a repository and source of tick cell lines for the international scientific community. More recently, the TCB has expanded to encompass cell lines derived from a range of insect genera including vectors of human, livestock and crop pathogens as well as more beneficial insects such as pollinators. The TCB generates, receives, stores and supplies arthropod cell lines to scientists worldwide, and provides live-streamed training and ongoing support, as some of these cell lines can be quite challenging to maintain. The TCB portfolio contains cell lines derived from most of the economically important tick-borne disease vectors including multiple species of the genera Ixodes, Rhipicephalus, Hyalomma, Amblyomma and Dermacentor, and a growing collection of insect cell lines derived from mosquitoes, biting midges, sand flies, tsetse flies, triatomine bugs, fruit flies and honey bees. Methods used in the TCB for generating arthropod cell lines and examples of their application in isolation, propagation and study of intracellular bacteria will be presented. Further information about the TCB and the currently-available cell lines is available on our website https://www.liverpool.ac.uk/research/facilities/tick-cell-biobank/.

Dr Lesley Bell-Sakyi

Dr Lesley Bell-Sakyi

University of Liverpool, UK

13:20-13:40 AI in vector arthropod identification - Talk title TBC
Dr Ivo Elliot

Dr Ivo Elliot

University of Oxford, UK

13:40-14:00 Wolbachia in vector control - Talk title TBC
Dr Thomas Walker

Dr Thomas Walker

University of Warwick, UK

14:00-14:20 Pathogens and symbionts in under-studied vectors - Talk title TBC
Dr Jing Jing Khoo

Dr Jing Jing Khoo

University of Liverpool, UK

14:20-14:40 Discussion
14:40-15:10 Break

Chair

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Dr Jing Jing Khoo

University of Liverpool, UK

15:10-16:30 10 selected posters from ECR

16:30-18:00 Poster session and reception

09:00-09:20 Ticks and their endosymbionts: from their accurate assignation to a mosaic of interactions based on tick metagenomes

Ticks harbour a wide range of pathogens, making them among the most important vectors affecting human and veterinary health. Positioned at the interface between humans, livestock, and wildlife, ticks provide opportunities for the emergence of zoonotic diseases. As obligate blood feeders, ticks rely on bacterial endosymbionts to obtain essential nutrients, such as B vitamins, absent from their restricted diet.

Evidence of co-evolution and interactions between ticks and their endosymbionts can be observed in the genomes of these bacterial partners, yet most endosymbionts remain uncultivable in cell-free media, complicating full genome recovery. Tick metagenomics has emerged as a promising solution, offering a holistic view of tick-associated microbial communities and their complex interactions.

Recent OMICS approaches have allowed us to characterise the virulence potential of Anaplasma and Ehrlichia species identified in ticks and in both wildlife and a human in the Amazon biome of French Guiana. On another hand, we showed that some microbes initially identified as pathogens are in fact nutritional endosymbionts. Phylogenomic and genomic analyses allowed us to distinguish these endosymbionts from closely related pathogenic species, highlighting that the use of non-specialized methods can lead to misidentifications. Accurate assessment of infection risks is essential for designing effective prevention strategies. Lastly, through metagenomic analysis of the tick Hyalomma marginatum, we demonstrated that—unlike other tick species, which typically harbour a single lineage of nutritional symbionts—H. marginatum possesses a unique dual-partner nutritional symbiosis. The versatility of NGS technologies enables a valuable initial characterization of tick–microbe interactions across diverse contexts.

Dr Marie Buysse

Dr Marie Buysse

French National Centre for Scientific Research, France

09:20-09:40 Anaplasma - Talk title TBC
Professor Richard Birtles

Professor Richard Birtles

University of Salford, UK

09:40-10:00 Evolutionary genomics of Wolbachia in mosquito vectors and implications for disease control

Wolbachia, an intracellular bacterium with antiviral properties, is being harnessed worldwide to control mosquito-borne diseases. Yet our understanding of its natural diversity and evolutionary dynamics remains incomplete. Recent work has shown that Wolbachia strains deployed in Aedes aegypti release programmes to control dengue exhibit remarkable genome stability following their introduction in the field. However, in their native hosts, these same strains exist as distinct genomic variants that can differ in symbiont density and tolerance to environmental stress, with direct consequences for Wolbachia’s antiviral capacity. Building on these findings, we investigated the evolutionary genomics of Wolbachia in the Asian tiger mosquito Aedes albopictus, which naturally harbours a dual infection with strains wAlbA and wAlbB. Using genome-wide analyses of Wolbachia sampled across the native and invasive ranges of Ae. albopictus, we show that the wAlbA / wAlbB superinfection arose ~6,000-9,000 years ago and has since co-diverged with host populations, consistent with strict maternal transmission of the symbiont. Despite the close phylogenetic relationship among samples, we uncover striking heterogeneity in Wolbachia density, including infections persisting at extremely low levels as well as extensive gene content variation within wAlbB, a strain currently used in disease control. Some of the variable genes are linked to the ability of Wolbachia to spread through host populations and many reside in repetitive or prophage regions, implicating transposable elements as key drivers of structural genomic change. Taken together, our findings highlight that both standing genetic variation within strains and long-term evolutionary processes shape the ecology of Wolbachia in vector species. These insights emphasize the need to integrate genomic, ecological, and evolutionary perspectives when selecting and optimizing Wolbachia strains for disease control programmes.

Dr Julien Martinez

Dr Julien Martinez

University of Glasgow, UK

10:00-10:20 Discussion
10:20-10:50 Break

Chair

Paul Newton

Professor Paul Newton

University of Oxford, UK

10:50-11:10 Field epidemiology - Talk title TBC
Professor Pierre-Edouard Fournier

Professor Pierre-Edouard Fournier

Aix-Marseille Université, France

11:10-11:30 Vector and disease ecology - Talk title TBC
Dr Kayleigh Hansford

Dr Kayleigh Hansford

UK Health Security Agency, UK

11:30-11:50 Ecology of Orentia tsutsugamushi in a tropical ecosystem from the perspective of host-vector associations in a changing landscape

Introduction. Orientia tsutsugamushi, the obligate intracellular bacterium responsible for scrub typhus, persists within a complex ecological triad involving vertebrate hosts, chigger mite vectors, and the surrounding environment. Despite its significant public health impact in the Asia-Pacific region, ecological insights into its transmission dynamics remain limited, particularly in tropical biodiversity hotspots such as Malaysia.

Methodology. Hosts, including small mammals (i.e., Rodentia and Scandentia) and birds (i.e., passerines, corvids, shorebirds,  and wild or domestic galliform birds) from forests, village agricultural (i.e., paddy fields), and urban environments, as well as large-scale oil palm plantations across Peninsular Malaysia and Sarawak, were trapped, handled, and examined following humane protocols. Blood and tissues (i.e., liver, spleen, kidney, and lung) were harvested only from galliform birds and corvids. Chiggers were collected from all hosts captured during this study. DNAs of chiggers, tissues, and blood samples were extracted using an in-house optimised protocol and subsequently analysed via nested PCR targeting the TSA47 gene. Landscapes-host-vector-pathogen relationships were analysed using bipartite network analysis to uncover their natural associations.

Results. Overall, 482 hosts were examined and processed. Of these, 1,020 chiggers were collected from small mammals, passerine birds, and wild Galliformes, along with 892 samples of blood (n=223) and tissues (n=669) from crows and domestic birds, which were used for DNA extraction and screened for O. tsutsugamushi. This yielded three positive results (6.67%) in chigger pools associated with small mammals. In contrast, none of the bird-associated chigger pools or corvid samples tested positive. Screening of galliform organ samples identified two positive samples (2.9%). Phylogenetic analysis indicated that sequences from galliform organs (lungs; domestic chicken, Pahang, and liver; red junglefowl, Johor) were closely related to the Karp strain. Three sequences from small mammal-associated chigger pools showed genetic diversity: (i) one sequence was closely related to the TH1817 strain and UT418 isolate from Thailand (L. deliense; T. glis; Pasir Raja; Forest), (ii) another formed a clade with the CRF79 isolate (L. arenicola; R. tanezumi R3 mitotype; Kota Tinggi; oil palm plantation), and (iii) the third sequence did not cluster with any known reference strains or isolates, suggesting a potentially distinct lineage (L. deliense; R. tiomanicus; Kota Tinggi; oil palm plantation). Analysis of natural associations between host, vector, pathogens, and landscapes is ongoing.

Conclusion. Our findings highlight the ecological complexity underpinning O. tsutsugamushi maintenance and transmission in tropical ecosystems. The presence of human-pathogenic strains in both wildlife-associated vectors and domestic poultry underscores the need to incorporate environmental surveillance into One Health strategies. Understanding these host–vector–pathogen dynamics is essential for anticipating the emergence and spread of intracellular zoonotic pathogens in rapidly changing landscapes.

Dr Zubaidah Ya’cob

Dr Zubaidah Ya’cob

Universiti Malaya, Malaysia

11:50-12:10 Discussion

13:30-13:50 Diagnostic challenges and management of rickettsial diseases: An Indian experience

Rickettsial diseases are a significant but often underrecognized cause of acute febrile illness across various regions in India. The diagnostic challenges stem from their highly variable and non-specific clinical presentations, which frequently mimic other common infections such as Dengue, Malaria, and Leptospirosis. Early clinical features include fever, headache and rash that are difficult to distinguish from other acute febrile illnesses. This leads to a delay in diagnosis, especially in resource-limited settings without sensitive and specific tests.

The commonly used Weil-Felix test, though inexpensive and accessible, lacks both sensitivity and specificity and may yield false negatives in early disease diagnosis. To address the diagnostic gap, enzyme-linked immunosorbent assay (ELISA) has emerged as a valuable tool for the serodiagnosis of rickettsial diseases in India. ELISA offers improved sensitivity and specificity over the Weil-Felix test, allowing for more reliable detection of anti-rickettsial antibodies, especially in the later stages of infection.  Advanced serological and molecular methods, such as indirect immunofluorescence assay (IFA) and PCR, provide superior diagnostic accuracy, but their availability is mostly restricted to tertiary care centres in urban areas.

The management of rickettsial diseases in India is further complicated by these diagnostic delays. However, empirical antibiotic therapy primarily with doxycycline proves highly effective when initiated promptly, drastically reducing morbidity and mortality rates. Notably, children and individuals in rural and semi-urban regions bear a disproportionate burden. The Indian experience highlights the critical need for greater clinical suspicion, improved access to accurate diagnostics, and robust public health surveillance. Proactive education of healthcare providers and guideline-based empirical therapy in suspected cases are essential strategies for successful management, emphasising a continued commitment to bridging gaps in diagnosis and care.

Professor Siraj Ahmed Khan

Professor Siraj Ahmed Khan

Indian Council of Medical Research, India

13:50-14:10 Clinical diagnostics - Talk title TBC
Dr Cecilia Kato

Dr Cecilia Kato

Centers for Disease Control and Prevention, US

14:10-14:30 Field/clinical epidemiology - Talk title TBC
Dr Aránzazu Portillo Barrio

Dr Aránzazu Portillo Barrio

San Pedro University Hospital-CIBIR, Spain

14:30-14:50 Scrub typhus in Chile: update and implications

The discovery of scrub typhus cases in southern Chile has changed the panorama of this important rickettsiosis, which was firmly associated to a certain bacterial species (Orientia tsutsugamushi) and a certain genus of trombiculid mites (Leptotrombidium) in Asia-Pacific. By now, we know that scrub typhus in Chile is caused by a different species of Orientia, transmitted by distinct genera of chigger mites. Data of >200 confirmed cases now allows a first clinical analysis of Chilean scrub typhus. Recent studies in other American countries and in Africa suggest a wider geographical distribution of potentially pathogenic Orientia species. The findings in Chile underscore the importance to maintain vigilant and question traditional concepts, especially in the field of rickettsial infections and other vector-borne diseases.

Dr Thomas Weitzel

Dr Thomas Weitzel

Universidad del Desarrollo, South America

15:10-15:20 Closing remarks
15:20-15:45 Closing coffee